Data Stores Inventory¶

Graph Databases¶

Store	Technology	Path / URI	Used By	Description
Memory Graph	Kuzu (embedded)	`~/.amplihack/memory/kuzu_db/`	`amplihack.memory`, `amplihack-memory-lib`	Persistent memory storage with CognitiveMemory 6-type system
Blarify Graph (Neo4j)	Neo4j (external)	`$NEO4J_URI`	`vendor/blarify/main.py`	Code knowledge graph for cross-file symbol analysis
Blarify Graph (FalkorDB)	FalkorDB (external)	configured via Blarify	`vendor/blarify/`	Alternative graph backend for Blarify

Filesystem Stores¶

Store	Path	Format	Used By	Description
Runtime Context	`.claude/runtime/hook_context.json`	JSON	`context/adaptive/strategies.py`	Hook-injected context for Claude discovery
Launcher Context	`.claude/runtime/launcher_context.json`	JSON	`context/adaptive/detector.py`, `hooks/launcher_detector.py`	Launcher environment context
Session Logs	`.claude/runtime/logs/<session_id>/`	Mixed	`session.py`, hooks	Per-session decision records and logs
Trace Log	`~/.amplihack/trace.jsonl`	JSONL	`tracing/trace_logger.py`	LLM call traces for observability
Discoveries	`~/.amplihack/.claude/context/DISCOVERIES.md`	Markdown	`memory.discoveries`	Cross-session learning store
Patterns	`~/.amplihack/.claude/context/PATTERNS.md`	Markdown	Agents, context	Proven patterns and solutions
User Preferences	`~/.amplihack/.claude/context/USER_PREFERENCES.md`	Markdown	All agents	Persisted user preference settings
Settings	`~/.claude/settings.json`	JSON	`settings.py`, `settings_generator/`	Claude Code global settings with hook configuration
Bundle Manifests	`<bundle_path>/manifest.json`	JSON	`bundle_generator/`	Bundle metadata and agent definitions
Bundle Config	`<bundle_path>/config/bundle_config.json`	JSON	`bundle_generator/`	Per-bundle configuration
Plugin State	`~/.amplihack/.claude/`	Directory tree	`plugin_manager/`, `mode_detector/`	Installed plugin files (skills, agents, hooks, etc.)
Recipe Files	`.claude/recipes/*.yaml`	YAML	`recipe_cli/`, `recipes/`	Workflow recipe definitions
Fleet Transcripts	`$CLAUDE_PROJECT_DIR/.claude/runtime/fleet/`	JSON	`fleet/_transcript.py`	Multi-agent fleet session transcripts

Configuration Sources¶

Store	Path	Format	Description
Project Config	`pyproject.toml`	TOML	Package metadata, dependencies, tool configuration
Claude MD	`CLAUDE.md`	Markdown	Claude Code project instructions
Docker Compose	`docker-compose*.yml`	YAML	Docker container definitions (when Docker mode enabled)
UVX Settings	`uvx_settings_template.json`	JSON	Template for UVX environment settings