Data Stores Inventory

Graph Databases

Store	Technology	Path / URI	Used By	Description
Memory Graph	Kuzu (embedded)	~/.amplihack/memory/kuzu_db/	amplihack.memory, amplihack-memory-lib	Persistent memory storage with CognitiveMemory 6-type system
Blarify Graph (Neo4j)	Neo4j (external)	$NEO4J_URI	vendor/blarify/main.py	Code knowledge graph for cross-file symbol analysis
Blarify Graph (FalkorDB)	FalkorDB (external)	configured via Blarify	vendor/blarify/	Alternative graph backend for Blarify

Filesystem Stores

Store	Path	Format	Used By	Description
Runtime Context	.claude/runtime/hook_context.json	JSON	context/adaptive/strategies.py	Hook-injected context for Claude discovery
Launcher Context	.claude/runtime/launcher_context.json	JSON	context/adaptive/detector.py, hooks/launcher_detector.py	Launcher environment context
Session Logs	.claude/runtime/logs/<session_id>/	Mixed	session.py, hooks	Per-session decision records and logs
Trace Log	~/.amplihack/trace.jsonl	JSONL	tracing/trace_logger.py	LLM call traces for observability
Discoveries	~/.amplihack/.claude/context/DISCOVERIES.md	Markdown	memory.discoveries	Cross-session learning store
Patterns	~/.amplihack/.claude/context/PATTERNS.md	Markdown	Agents, context	Proven patterns and solutions
User Preferences	~/.amplihack/.claude/context/USER_PREFERENCES.md	Markdown	All agents	Persisted user preference settings
Settings	~/.claude/settings.json	JSON	settings.py, settings_generator/	Claude Code global settings with hook configuration
Bundle Manifests	<bundle_path>/manifest.json	JSON	bundle_generator/	Bundle metadata and agent definitions
Bundle Config	<bundle_path>/config/bundle_config.json	JSON	bundle_generator/	Per-bundle configuration
Plugin State	~/.amplihack/.claude/	Directory tree	plugin_manager/, mode_detector/	Installed plugin files (skills, agents, hooks, etc.)
Recipe Files	.claude/recipes/*.yaml	YAML	recipe_cli/, recipes/	Workflow recipe definitions
Fleet Transcripts	$CLAUDE_PROJECT_DIR/.claude/runtime/fleet/	JSON	fleet/_transcript.py	Multi-agent fleet session transcripts

Configuration Sources

Store	Path	Format	Description
Project Config	pyproject.toml	TOML	Package metadata, dependencies, tool configuration
Claude MD	CLAUDE.md	Markdown	Claude Code project instructions
Docker Compose	docker-compose*.yml	YAML	Docker container definitions (when Docker mode enabled)
UVX Settings	uvx_settings_template.json	JSON	Template for UVX environment settings